L. Airoldi and M. W. Beck, Loss, status and trends for coastal marine habitats of, Europe. Oceanography and Marine Biology: An Annual Review, vol.45, pp.345-405, 2007.

J. S. Alabaster, P. J. Gough, and W. J. Brooker, The environmental requirements of Atlantic salmon, Salmo salar L., during their passage through the Thames Estuary, Journal of Fish Biology, vol.38, pp.741-762, 1982.

R. Amara, T. Meziane, C. Gilliers, G. Hermel, and P. Laffargue, Growth and condition indices in juvenile sole Solea solea measured to assess the quality of essential fish habitat, Marine Ecology Progress Series, vol.351, pp.201-208, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00481472

R. Amara, J. Selleslagh, G. Billon, and C. Minier, Growth and condition of 0-group European flounder, Platichthys flesus as indicator of estuarine habitat quality, Hydrobiologia, vol.627, pp.87-98, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00480217

J. H. Andersen, B. S. Halpern, S. Korpinen, C. Murray, and J. Reker, Baltic Sea biodiversity status vs. cumulative human pressures, Estuarine, Coastal and Shelf Science, vol.161, pp.88-92, 2015.
DOI : 10.1016/j.ecss.2015.05.002

URL : https://zenodo.org/record/27731/files/Andersen_et_al_2015.pdf

T. R. Anderson, Plankton functional type modelling: running before we can walk, Journal of Plankton Research, vol.27, pp.1073-1081, 2005.
DOI : 10.1093/plankt/fbi076

URL : https://academic.oup.com/plankt/article-pdf/27/11/1073/4481304/fbi076.pdf

G. Aneer, High natural mortality of Baltic herring (Clupea harengus) eggs caused by algal exudates?, Marine Biology, vol.94, pp.163-169, 1987.

B. Archambault, O. Le-pape, L. Baulier, Y. Vermard, M. Véron et al., Adult-mediated connectivity affects inferences on population dynamics and stock assessment of nursery-dependent fish populations, Fisheries Research, vol.181, pp.198-213, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01415891

B. Archambault, E. Rivot, M. Savina, L. Pape, and O. , Using a spatially structured life cycle model to assess the influence of multiple stressors on an exploited coastal-nursery-dependent population, Estuarine, Coastal and Shelf Science, pp.1-10, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01843598

M. I. Batista, S. Henriques, M. P. Pais, and H. N. Cabral, Assessment of cumulative human pressures on a coastal area: integrating information for MPA planning and management, Ocean and Coastal Management, vol.102, pp.248-257, 2014.

M. W. Beck, K. L. Heck, K. W. Able, D. L. Childers, D. B. Eggleston et al., The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates, BioScience, vol.51, p.633, 2001.

R. Berghahn, M. Waltemath, and A. D. Rijnsdorp, Mortality of fish from the by-catch of shrimp vessels in the North Sea, Journal of Applied Ichthyology, vol.8, pp.293-306, 1992.

C. N. Bianchi, M. Corsini-foka, C. Morri, and A. Zenetos, Thirty years after: dramatic change in the coastal marine ecosystems of Kos Island, Mediterranean Marine Science, vol.15, pp.482-497, 2014.

C. Bordehore, A. A. Ramos-espla, and R. Riosmena-rodriguez, Comparative study of two maerl beds with different otter trawling history, southeast Iberian Peninsula. Aquatic Conservation: Marine and Freshwater Ecosystems, vol.13, pp.43-54, 2003.

A. ´. Borja, D. M. Dauer, M. Elliott, and C. A. Simenstad, Medium and long-term recovery of estuarine and coastal ecosystems: patterns, rates and restoration effectiveness, Estuaries and Coasts, vol.33, pp.1249-1260, 2010.

M. Bratberg, P. A. Olsvik, R. B. Edvardsen, H. K. Brekken, R. Vadla et al., Effects of oil pollution and persistent organic pollutants (POPs) on glycerophospholipids in liver and brain of male Atlantic cod (Gadus morhua), Chemosphere, vol.90, pp.2157-2171, 2013.

P. Cameron, V. Westernhagen, and H. , Malformation rates in embryos of North Sea fishes in 1991 and 1992, Marine Pollution Bulletin, vol.34, pp.129-134, 1997.

M. Canli, A. , and G. , The relationships between heavy metal (Cd, Cr, Cu, Fe, Pb, Zn) levels and the size of six Mediterranean fish species, Environmental Pollution, vol.121, pp.129-136, 2003.

J. D. Carl, C. R. Sparrevohn, H. Nicolajsen, and J. G. Stttrup, Substratum selection by juvenile flounder Platichthys flesus (L.): effect of ephemeral filamentous macroalgae, Journal of Fish Biology, vol.72, pp.2570-2578, 2008.

J. E. Cloern, Our evolving conceptual model of the coastal eutrophication problem, Marine Ecology Progress Series, vol.210, pp.223-253, 2001.
DOI : 10.3354/meps210223

URL : https://www.int-res.com/articles/meps/210/m210p223.pdf

R. Costanza, R. Arge, R. De-groot, S. Farber, M. Grasso et al., The value of the world's ecosystem services and natural capital, Nature, vol.387, pp.253-260, 1997.

M. J. Costello and J. C. Gamble, Effects of sewage sludge on marine fish embryos and larvae, Marine Environmental Research, vol.33, pp.49-74, 1992.

A. Courrat, J. Lobry, D. Nicolas, P. Laffargue, R. Amara et al., Anthropogenic disturbance on nursery function of estuarine areas for marine species, Estuarine, Coastal and Shelf Science, vol.81, pp.179-190, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00480403

C. M. Crain, K. Kroeker, and B. S. Halpern, Interactive and cumulative effects of multiple human stressors in marine systems, Ecology Letters, vol.11, pp.1304-1315, 2008.

J. F. Davis, Fate of environmental pollutants, Water Environment Research, vol.71, pp.1070-1078, 1999.

F. Davoodi and G. Claireaux, Effects of exposure to petroleum hydrocarbons upon the metabolism of the common sole Solea solea, Marine Pollution Bulletin, vol.54, pp.928-934, 2007.

R. De-groot, L. Brander, S. Van-der-ploeg, R. Costanza, F. Bernard et al., Global estimates of the value of ecosystems and their services in monetary units, Ecosystem Services, vol.1, pp.50-61, 2012.

L. A. Deegan, Effects of estuarine environmental conditions on population dynamics of young-of-the-year Gulf menhaden, Marine Ecology Progress Series, vol.68, pp.195-205, 1990.

C. Delpech, A. Courrat, S. Pasquaud, J. Lobry, O. Le-pape et al., Development of a fish-based index to assess the ecological quality of transitional waters: the case of French estuaries, Marine Pollution Bulletin, vol.60, pp.908-918, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00584047

P. Drake, A. M. Arias, F. Baldó, J. A. Cuesta, A. Rodríguez et al., Spatial and temporal variation of the nekton and hyperbenthos from a temperate European estuary with regulated freshwater inflow, Estuaries, vol.25, pp.451-468, 2002.

P. Drake, A. Borlán, E. González-ortegó-n, F. Baldó, C. Vilas et al., Spatio-temporal distribution of early life stages of the European anchovy Engraulis encrasicolus L. within a European temperate estuary with regulated freshwater inflow: effects of environmental variables, Journal of Fish Biology, vol.70, pp.1689-1709, 2007.

W. Ekau, H. Auel, H. Pörtner, G. , and D. , Impacts of hypoxia on the structure and processes in pelagic communities (zooplankton, macro-invertebrates and fish), Biogeosciences, vol.7, pp.1669-1699, 2010.

M. Elliott and K. Hemingway, Fishes in estuaries, Fishes in Estuaries, pp. i-xx, 2002.

J. Falk-petersen, P. Renaud, A. , and N. , Establishment and ecosystem effects of the alien invasive red king crab (Paralithodes camtschaticus) in the Barents Sea-a review, ICES Journal of Marine Science, vol.68, pp.479-488, 2011.

E. Feunteun, Management and restoration of European eel population (Anguilla anguilla): an impossible bargain, Ecological Engineering, vol.18, pp.575-591, 2002.

J. Foden, S. I. Rogers, and A. P. Jones, Human pressures on UK seabed habitats: a cumulative impact assessment, Marine Ecology Progress Series, vol.428, pp.33-47, 2011.
DOI : 10.3354/meps09064

URL : https://www.int-res.com/articles/meps2011/428/m428p033.pdf

F. J. Fodrie and G. Mendoza, Availability, usage and expected contribution of potential nursery habitats for the California halibut, Estuarine, Coastal and Shelf Science, vol.68, pp.149-164, 2006.

F. J. Fodrie, L. A. Levin, L. , and A. , Use of population fitness to evaluate the nursery function of juvenile habitats, Marine Ecology Progress Series, vol.385, pp.39-49, 2009.

M. C. Fossi, D. Coppola, M. Baini, M. Giannetti, C. Guerranti et al., Large filter feeding marine organisms as indicators of microplastic in the pelagic environment: the case studies of the Mediterranean basking shark (Cetorhinus maximus) and fin whale (Balaenoptera physalus), Marine Environmental Research, vol.100, pp.17-24, 2014.

M. Frantzen, I. B. Falk-petersen, J. Nahrgang, T. J. Smith, G. H. Olsen et al., Toxicity of crude oil and pyrene to the embryos of beach spawning capelin (Mallotus villosus), Aquatic Toxicology, vol.108, pp.42-52, 2012.

S. Frantzen, A. Maage, A. Duinker, K. Julshamn, and S. A. Iversen, A baseline study of metals in herring (Clupea harengus) from the Norwegian Sea, with focus on mercury, cadmium, arsenic and lead, Chemosphere, vol.127, pp.164-170, 2015.

C. Gilliers, O. Le-pape, Y. Désaunay, J. Morin, D. Guérault et al., Are growth and density quantitative indicators of essential fish habitat quality? An application to the common sole Solea solea nursery grounds, Estuarine, Coastal and Shelf Science, vol.69, pp.96-106, 2006.

F. Goodsir, H. J. Bloomfield, A. D. Judd, F. Kral, L. A. Robinson et al., A spatially resolved pressure-based approach to evaluate combined effects of human activities and management in marine ecosystems, ICES Journal of Marine Science, vol.72, pp.2245-2256, 2015.

M. Goren and B. S. Galil, A review of changes in the fish assemblages of Levantine inland and marine ecosystems following the introduction of non-native fishes, Journal of Applied Ichthyology, vol.21, pp.364-370, 2005.

E. Gorokhova, T. Fagerberg, and S. Hansson, Predation by herring (Clupea harengus) and sprat (Sprattus sprattus) on Cercopagis pengoi in a western Baltic Sea bay, ICES Journal of Marine Science, vol.61, pp.959-965, 2004.

E. Gorokhova, S. Hansson, H. Höglander, and C. M. Andersen, Stable isotopes show food web changes after invasion by the predatory cladoceran Cercopagis pengoi in a Baltic Sea bay, Oecologia, vol.143, pp.251-259, 2005.

J. M. Hall-spencer, J. Grall, P. G. Moore, and R. J. Atkinson, Bivalve fishing and maerl-bed conservation in France and the UK-retrospect and prospect. Aquatic Conservation: Marine and Freshwater Ecosystems, vol.13, p.33, 2003.

B. S. Halpern, C. M. Ebert, C. V. Kappel, E. M. Madin, F. Micheli et al., Global priority areas for incorporating land-sea connections in marine conservation, Conservation Letters, vol.2, pp.1-8, 2009.

B. S. Halpern, K. A. Selkoe, F. Micheli, and C. V. Kappel, Evaluating and ranking the vulnerability of global marine ecosystems to anthropogenic threats, Conservation Biology, vol.21, pp.1301-1315, 2007.

B. S. Halpern, S. Walbridge, K. A. Selkoe, C. V. Kappel, F. Micheli et al., A global map of human impact on marine ecosystems, Science, vol.319, pp.948-952, 2008.

S. Henriques, M. P. Pais, R. P. Vasconcelos, A. Murta, M. Azevedo et al., Structural and functional trends indicate fishing pressure on marine fish assemblages, Journal of Applied Ecology, vol.51, pp.623-631, 2014.

J. G. Hiddink, S. Jennings, M. J. Kaiser, A. M. Queiró-s, D. E. Duplisea et al., Cumulative impacts of seabed trawl disturbance on benthic biomass, production, and species richness in different habitats, Canadian Journal of Fisheries and Aquatic Sciences, vol.63, pp.721-736, 2006.

C. M. Holmlund and M. Hammer, Ecosystem services generated by fish populations, Ecological Economics, vol.29, pp.253-268, 1999.

D. F. Houlihan, M. J. Costello, C. J. Secombes, R. Stagg, and J. Brechin, Effects of sewage sludge exposure on growth, feeding and protein synthesis of dab, 1994.

, Marine Environmental Research, vol.37, pp.331-353

M. I. Ilarri, A. T. Souza, C. Antunes, L. Guilhermino, and R. Sousa, Influence of the invasive Asian clam Corbicula fluminea (Bivalvia: Corbiculidae) on estuarine epibenthic assemblages, Estuarine, Coastal and Shelf Science, vol.143, pp.12-19, 2014.

I. Isaksson, L. Pihl, and J. Van-montfrans, Eutrophication-related changes in macrovegetation and foraging of young cod (Gadus morhua L.): a mesocosm experiment, Journal of Experimental Marine Biology and Ecology, vol.177, pp.203-217, 1994.

J. Jebali, M. Sabbagh, M. Banni, N. Kamel, S. Ben-khedher et al., Multiple biomarkers of pollution effects in Solea solea fish on the Tunisia coastline, Environmental Science and Pollution Research, vol.20, pp.3812-3821, 2013.

I. R. Jenkinson, G. Claireaux, and P. Gentien, Biorheological properties of intertidal organic fluff on mud flats and its modification of gill ventilation in buried sole Solea solea, Marine Biology, vol.150, pp.471-485, 2007.

S. Jennings, R. , and J. , Towards an ecosystem approach to fisheries in Europe: a perspective on existing progress and future directions, Fish and Fisheries, vol.12, pp.125-137, 2011.

T. Johannessen, Repeated incidents of abrupt and persistent recruitment failures in gadoids in relation to increasing eutrophication, From an Antagonistic to a Synergistic Predator Prey Perspective, pp.11-37, 1919.

J. L. Johansen, N. A. Herbert, and J. F. Steffensen, The behavioural and physiological response of Atlantic cod Gadus morhua L. to short-term acute hypoxia, Journal of Fish Biology, vol.68, pp.1918-1924, 2006.

L. Johansen, I. Jensen, H. Mikkelsen, P. Bjørn, P. A. Jansen et al., Disease interaction and pathogens exchange between wild and farmed fish populations with special reference to Norway, Aquaculture, vol.315, pp.167-186, 2011.

D. W. Johnston and D. J. Wildish, Avoidance of dredge spoil by herring (Clupea harengus harengus), Bulletin of Environmental Contamination and Toxicology, vol.26, pp.307-314, 1981.

H. Jokinen, H. Wennhage, V. Ollus, E. Aro, and A. Norkko, Juvenile flatfish in the northern Baltic Sea-long-term decline and potential links to habitat characteristics, Journal of Sea Research, vol.107, pp.67-75, 2016.

B. Jonsson, J. , and N. , Early environment influences later performance in fishes, Journal of Fish Biology, vol.85, pp.151-188, 2014.

N. A. Kamenos, P. G. Moore, and J. M. Spencer, Small-scale distribution of juvenile gadoids in shallow inshore waters; what role does maerl play?, ICES Journal of Marine Science, vol.61, pp.422-429, 2004.

A. Kempf, Ecosystem approach to fisheries in the European context-history and future challenges, Journal of Applied Ichthyology, vol.26, pp.102-109, 2010.

E. Kerambrun, F. Henry, L. Courcot, F. Gevaert, A. et al., Biological responses of caged juvenile sea bass (Dicentrarchus labrax) and turbot (Scophtalmus maximus) in a polluted harbour, Ecological Indicators, vol.19, pp.161-171, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00758750

E. Kerambrun, F. Henry, P. Perrichon, L. Courcot, T. Meziane et al., Growth and condition indices of juvenile turbot, Scophthalmus maximus, exposed to contaminated sediments: effects of metallic and organic compounds, Aquatic Toxicology, vol.108, pp.130-140, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00761219

A. Kideys, Recent dramatic changes in the Black Sea ecosystem: the reason for the sharp decline in Turkish anchovy fisheries, Journal of Marine Systems, vol.5, pp.171-181, 1994.

J. Klanj-s-cek and T. Legovi-c, Is anchovy (Engraulis encrasicolus, L.) overfished in the Adriatic Sea?, Ecological Modelling, vol.201, pp.312-316, 2007.

A. M. Knights, G. J. Piet, R. H. Jongbloed, J. E. Tamis, L. White et al., An exposure-effect approach for evaluating ecosystem-wide risks from human activities, ICES Journal of Marine Science, vol.72, pp.1105-1115, 2015.

D. N. Koons, T. W. Arnold, and M. Schaub, Understanding the demographic drivers of realized population growth rates, Ecological Applications, vol.27, pp.2102-2115, 2017.

G. Kornilovs, The modern state of Baltic herring spawning grounds in the Gulf of Riga. ICES Document CM, pp.26-32, 1993.

C. Kostecki, S. Rochette, R. Girardin, M. Blanchard, N. Desroy et al., Reduction of flatfish habitat as a consequence of the proliferation of an invasive mollusc, Estuarine, Coastal and Shelf Science, vol.92, pp.154-160, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00730159

M. Kummu, H. De-moel, G. Salvucci, D. Viviroli, P. J. Ward et al., Over the hills and further away from coast: global geospatial patterns of human and environment over the 20th-21st centuries, Environmental Research Letters, vol.11, p.15, 2016.

P. Laffaille, J. Lefeuvre, and E. Feunteun, Impact of sheep grazing on juvenile sea bass, Dicentrarchus labrax L., in tidal salt marshes, Biological Conservation, vol.96, pp.271-277, 2000.
URL : https://hal.archives-ouvertes.fr/hal-00762030

E. C. Lagares and F. G. Ordaz, Fisheries structural policy in the European Union: a critical analysis of a subsidised sector, Ocean and Coastal Management, vol.102, pp.200-211, 2014.

A. Lappalainen and L. Pesonen, Changes in fish community structure after cessation of waste water discharge in a coastal bay area west of Helsinki, northern Baltic Sea. Archive of Fishery and Marine Research Archiv fur Fischerei und Meeresforschung, vol.48, pp.226-241, 2000.

C. Lefrançois and G. Claireaux, Influence of ambient oxygenation and temperature on metabolic scope and scope for heart rate in the common sole Solea solea, Marine Ecology Progress Series, vol.259, pp.273-284, 2003.

E. Le-luherne, E. Réveillac, A. Ponsero, A. Sturbois, S. Ballu et al., Fish community responses to green tides in shallow estuarine and coastal areas, Estuarine, Coastal and Shelf Science, vol.175, pp.79-92, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01558431

L. Pape, O. Baulier, L. Cloarec, A. Martin, J. Le-loc'h et al., Habitat suitability for juvenile common sole (Solea solea, L.) in the Bay of Biscay (France): a quantitative description using indicators based on epibenthic fauna, Journal of Sea Research, vol.57, pp.126-136, 2007.

L. Pape, O. Guérault, D. Désaunay, and Y. , Effect of an invasive mollusc, American slipper limpet Crepidula fornicata, on habitat suitability for juvenile common sole Solea solea in the Bay of Biscay, Marine Ecology Progress Series, vol.277, pp.107-115, 2004.
URL : https://hal.archives-ouvertes.fr/hal-01823091

F. Levi and P. Francour, Behavioural response of Mullus surmuletus to habitat modification by the invasive macroalga Caulerpa taxifolia, Journal of Fish Biology, vol.64, pp.55-64, 2004.

P. S. Levin and G. W. Stunz, Habitat triage for exploited fishes: can we identify essential 'Essential Fish Habitat, Estuarine, Coastal and Shelf Science, vol.64, pp.70-78, 2005.

J. B. Lindholm, P. J. Auster, and L. S. Kaufman, Habitat-mediated survivorship of juvenile (0-year) Atlantic cod Gadus morhua, Marine Ecology Progress Series, vol.180, pp.247-255, 1999.

A. C. Longwell, S. Chang, A. Hebert, J. B. Hughes, P. et al., Pollution and developmental abnormalities of Atlantic fishes, Environmental Biology of Fishes, vol.35, pp.1-21, 1992.

H. K. Lotze, H. S. Lenihan, B. J. Bourque, R. H. Bradbury, R. G. Cooke et al., Depletion, degradation, and recovery potential of estuaries and coastal seas, Science, vol.312, pp.1806-1809, 2006.

H. K. Lotze, K. Reise, B. Worm, J. Van-beusekom, M. Busch et al., Human transformations of the Wadden Sea ecosystem through time: a synthesis, Helgoland Marine Research, vol.59, pp.84-95, 2005.

J. Maes, M. Stevens, and J. Breine, Modelling the migration opportunities of diadromous fish species along a gradient of dissolved oxygen concentration in a European tidal watershed, 2007.

, Estuarine, Coastal and Shelf Science, vol.75, pp.151-162

I. Malovic, W. Hemmingsen, M. , and K. , Trypanosome infections of marine fish in the southern Barents Sea and the invasive red king crab Paralithodes camtschaticus, Marine Pollution Bulletin, vol.60, pp.2257-2262, 2010.

F. Martignac, J. L. Baglinière, L. Thieulle, D. Ombredane, and J. Guillard, Influences of a dam on Atlantic salmon (Salmo salar) upstream migration in the Couesnon River (Mont Saint Michel Bay) using hydroacoustics, Estuarine, Coastal and Shelf Science, vol.134, pp.181-187, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01210190

S. Mcintosh, T. King, D. Wu, and P. V. Hodson, Toxicity of dispersed weathered crude oil to early life stages of Atlantic herring (Clupea harengus), Environmental Toxicology and Chemistry, vol.29, pp.1160-1167, 2010.

S. Meland, B. Salbu, and B. O. Rosseland, Ecotoxicological impact of highway runoff using brown trout (Salmo trutta L.) as an indicator model, Journal of Environmental Monitoring, vol.12, pp.654-664, 2010.

J. Meynecke and R. G. Richards, A full life cycle and spatially explicit individual-based model for the giant mud crab (Scylla serrata): a case study from a marine protected area, ICES Journal of Marine Science, vol.71, pp.484-498, 2014.

J. L. Molnar, R. L. Gamboa, C. Revenga, and M. D. Spalding, Assessing the global threat of invasive species to marine biodiversity, Frontiers in Ecology and the Environment, vol.6, pp.485-492, 2008.

P. J. Mumby, A. J. Edwards, J. E. Arias-gonzález, K. C. Lindeman, P. G. Blackwell et al., Mangroves enhance the biomass of coral reef fish communities in the Caribbean, Nature, vol.427, pp.533-536, 2004.

U. Niermann, F. Bingel, A. Gorban, A. D. Gordina, A. C. Gücü et al., Distribution of anchovy eggs and larvae (Engraulis encrasicolus Cuv.) in the Black Sea in 1991-1992, ICES Journal of Marine Science, vol.51, pp.395-406, 1994.

H. Ogut and H. W. Palm, Seasonal dynamics of Trichodina spp. on whiting (Merlangius merlangus) in relation to organic pollution on the eastern Black Sea coast of Turkey, Parasitology Research, vol.96, pp.149-153, 2005.

T. Oguz, B. Fach, and B. Salihoglu, Invasion dynamics of the alien ctenophore Mnemiopsis leidyi and its impact on anchovy collapse in the Black Sea, Journal of Plankton Research, vol.30, pp.1385-1397, 2008.

E. Olsen, S. Aanes, S. Mehl, J. C. Holst, A. Aglen et al., Cod, haddock, saithe, herring, and capelin in the Barents Sea and adjacent waters: a review of the biological value of the area, ICES Journal of Marine Science, vol.67, pp.87-101, 2010.

I. C. Olsson, L. A. Greenberg, and A. G. Eklöv, Effect of an artificial pond on migrating brown trout smolts, North American Journal of Fisheries Management, vol.21, pp.498-506, 2001.

H. O-¨-sterblom, S. Hansson, U. Larsson, O. Hjerne, F. Wulff et al., Human-induced trophic cascades and ecological regime shifts in the Baltic Sea, Ecosystems, vol.10, pp.877-889, 2007.

B. O-¨-ztürk, Invasive species of the Turkish Straits, The Turkish Straits: Maritime Safety, Legal and Environmental Aspects, pp.96-105, 2006.

A. P. Palstra, V. J. Van-ginneken, A. J. Murk, . Van-den, and G. E. Thillart, Are dioxin-like contaminants responsible for the eel (Anguilla anguilla) drama?, Naturwissenschaften, vol.93, pp.145-148, 2006.

R. Parmanne, O. Rechlin, and B. Sjöstrand, Status and future of herring and sprat stocks in the Baltic Sea, vol.10, pp.29-59, 1994.

S. Patel, K. Korsnes, Ø. Bergh, F. Vik-mo, J. Pedersen et al., Nodavirus in farmed Atlantic cod Gadus morhua in Norway, Diseases of Aquatic Organisms, vol.77, pp.169-173, 2007.

L. D. Peters, C. Porte, and D. R. Livingstone, Variation of antioxidant enzyme activities of sprat (Sprattus sprattus) larvae and organic contaminant levels in mixed zooplankton from the southern North Sea, Marine Pollution Bulletin, vol.42, pp.1087-1095, 2001.

J. K. Petersen and L. Pihl, Responses to hypoxia of plaice, Pleuronectes platessa, and dab, Limanda limanda, in the south-east Kattegat: distribution and growth, Environmental Biology of Fishes, vol.43, pp.311-321, 1995.

C. H. Peterson, M. J. Bishop, L. M. D'anna, J. , and G. A. , Multi-year persistence of beach habitat degradation from nourishment using coarse shelly sediments, Science of the Total Environment, vol.487, pp.481-492, 2014.

J. J. Piggott, C. R. Townsend, and C. D. Matthaei, Reconceptualizing synergism and antagonism among multiple stressors, Ecology and Evolution, vol.5, pp.1538-1547, 2015.

L. Pihl, J. Modin, and H. Wennhage, Recruitment to deteriorating habitat quality: effects of macroalgal blooms in coastal nursery grounds, Canadian Journal of Fisheries and Aquatic Sciences, vol.62, pp.1184-1193, 2005.

L. Pihl, S. Baden, N. Kautsky, P. Rönnbäck, T. Söderqvist et al., Shift in fish assemblage structure due to loss of seagrass Zostera marina habitats in Sweden, 2006.

, Estuarine, Coastal and Shelf Science, vol.67, pp.123-132

M. Power, M. J. Attrill, and R. M. Thomas, Environmental factors and interactions affecting the temporal abundance of juvenile flatfish in the Thames Estuary, Journal of Sea Research, vol.43, pp.135-149, 2000.

N. N. Rabalais, Human impacts on fisheries across the land-sea interface, Proceedings of the National Academy of Sciences, vol.112, pp.7892-7893, 2015.

M. Rahikainen, K. Hoviniemi, S. Mäntyniemi, J. Vanhatalo, I. Helle et al., Impacts of eutrophication and oil spills on the Gulf of Finland herring stock, Canadian Journal of Fisheries and Aquatic Sciences, vol.74, pp.1218-1232, 2017.

J. T. Reubens, U. Braeckman, J. Vanaverbeke, C. Van-colen, S. Degraer et al., Aggregation at windmill artificial reefs: CPUE of Atlantic cod (Gadus morhua) and pouting (Trisopterus luscus) at different habitats in the Belgian part of the North Sea, Fisheries Research, vol.139, pp.28-34, 2013.

W. J. Reynolds, J. E. Lancaster, and M. G. Pawson, Patterns of spawning and recruitment of sea bass to Bristol Channel nurseries in relation to the 1996 'Sea Empress' oil spill, Journal of the Marine Biological Association of the UK, vol.83, pp.1163-1170, 2003.

A. D. Rijnsdorp, F. Bastardie, S. G. Bolam, L. Buhl-mortensen, O. R. Eigaard et al., Towards a framework for the quantitative assessment of trawling impact on the seabed and benthic ecosystem, ICES Journal of Marine Science, vol.73, pp.127-138, 2016.

S. Rochette, O. Le-pape, J. Vigneau, and E. Rivot, A hierarchical Bayesian model for embedding larval drift and habitat models in integrated life cycles for exploited fish, Ecological Applications, vol.23, pp.1659-1676, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01210194

S. Rochette, E. Rivot, J. Morin, S. Mackinson, P. Riou et al., Effect of nursery habitat degradation on flatfish population: application to Solea solea in the Eastern Channel (Western Europe), Journal of Sea Research, vol.64, pp.34-44, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00729486

J. Ruiz, R. González-quiró-s, L. Prieto, and G. Navarro, A Bayesian model for anchovy (Engraulis encrasicolus): the combined forcing of man and environment, Fisheries Oceanography, vol.18, pp.62-76, 2009.

B. R. Schmidt, W. Hödl, and M. Schaub, From metamorphosis to maturity in complex life cycles: equal performance of different juvenile life history pathways, Ecology, vol.93, pp.657-667, 2012.

M. Sciberras and J. G. Hiddink, Predicting the effect of trawling based on biological traits of organisms and functional correlates of these traits to predict which functions may be disproportionally affected. Benthic Ecosystem Fisheries Impact Study, IMARES, vol.125, 2014.

G. Scopelliti, R. Di-leonardo, C. D. Tramati, A. Mazzola, and S. Vizzini, Premature aging in bone of fish from a highly polluted marine area, Marine Pollution Bulletin, vol.97, pp.333-341, 2015.

C. J. Secombes, A. White, T. C. Fletcher, R. Stagg, and D. F. Houlihan, Immune parameters of plaice, Pleuronectes platessa, L. along a sewage sludge gradient in the Firth of Clyde, Scotland. Ecotoxicology, vol.4, pp.329-340, 1995.

R. D. Seitz, H. Wennhage, U. Bergström, R. N. Lipcius, Y. et al., Ecological value of coastal habitats for commercially and ecologically important species, ICES Journal of Marine Science, vol.71, pp.648-655, 2014.

T. A. Shiganova and Y. V. Bulgakova, Effects of gelatinous plankton on Black Sea and Sea of Azov fish and their food resources, ICES Journal of Marine Science, vol.57, pp.641-648, 2000.

T. A. Shiganova, Z. A. Mirzoyan, E. A. Studenikin, S. P. Volovik, I. Siokou-frangou et al., Population development of the invader ctenophore Mnemiopsis leidyi, in the Black Sea and in other seas of the Mediterranean basin, Marine Biology, vol.139, pp.431-445, 2001.

V. Stelzenmüller, T. Schulze, H. O. Fock, and J. Berkenhagen, Integrated modelling tools to support risk-based decision-making in marine spatial management, Marine Ecology Progress Series, vol.441, pp.197-212, 2011.

J. G. Støttrup, C. Stenberg, K. Dahl, L. D. Kristensen, and K. Richardson, Restoration of a temperate reef: effects on the fish community, Open Journal of Ecology, vol.04, pp.1045-1059, 2014.

G. Sundblad, U. Bergström, A. Sandstrom, and P. Eklov, Nursery habitat availability limits adult stock sizes of predatory coastal fish, ICES Journal of Marine Science, vol.71, pp.672-680, 2014.

G. L. Taranger, Ø. Karlsen, R. J. Bannister, K. A. Glover, V. Husa et al., Risk assessment of the environmental impact of Norwegian Atlantic salmon farming, ICES Journal of Marine Science, vol.72, pp.997-1021, 2015.

N. Teichert, A. Borja, G. Chust, A. Uriarte, and M. Lepage, Restoring fish ecological quality in estuaries: implication of interactive and cumulative effects among anthropogenic stressors, Science of the Total Environment, vol.542, pp.383-393, 2016.

C. Tentelier and C. Piou, Obstacles to migration constrain nest distribution of Atlantic salmon, Ecology of Freshwater Fish, vol.20, pp.400-408, 2011.

E. C. Teschner, G. Kraus, S. Neuenfeldt, R. Voss, H. H. Hinrichsen et al., Impact of hypoxia on consumption of Baltic cod in a multispecies stock assessment context, Journal of Applied Ichthyology, vol.26, pp.836-842, 2010.

R. H. Thurstan, C. M. Roberts, and R. K. Unsworth, Ecological meltdown in the Firth of Clyde, Scotland: two centuries of change in a coastal marine ecosystem, PLoS One, vol.5, p.11767, 2010.

M. T. Tomczak, J. J. Heymans, J. Yletyinen, S. Niiranen, S. A. Otto et al., Ecological network indicators of ecosystem status and change in the Baltic Sea, PLoS ONE, vol.8, pp.1-11, 2013.

E. A. Tsikhon-lykanina and O. G. Reznitchenko, Feeding peculiarities of different size species of ctenophore Mnemiopsis in the Black Sea, Oceanology, vol.31, pp.442-446, 1991.

A. W. Turnpenny and C. J. Taylor, An assessment of the effect of the Sizewell power stations on fish populations, Hydroécologie Appliquée, vol.12, pp.87-134, 2000.

P. D. Van-denderen, N. T. Hintzen, A. D. Rijnsdorp, P. Ruardij, and T. Van-kooten, Habitat-specific effects of fishing disturbance on benthic species richness in marine soft sediments, Ecosystems, vol.17, pp.1216-1226, 2014.

K. E. Van-de-wolfshaar, R. Hillerislambers, and A. Gårdmark, Effect of habitat productivity and exploitation on populations with complex life cycles, Marine Ecology Progress Series, vol.438, pp.175-184, 2011.

R. P. Vasconcelos, M. I. Batista, and S. Henriques, Current limitations of global conservation to protect higher vulnerability and lower resilience fish species, 2017.

R. P. Vasconcelos, P. Reis-santos, V. Fonseca, A. Maia, M. Ruano et al., Assessing anthropogenic pressures on estuarine fish nurseries along the Portuguese coast: a multi-metric index and conceptual approach, Science of the Total Environment, vol.374, pp.199-215, 2007.

J. D. Via, G. Van-den-thillart, O. Cattani, and P. Cortesi, Behavioural responses and biochemical correlates in Solea solea to gradual hypoxic exposure, Canadian Journal of Zoology, vol.76, pp.2108-2113, 1998.

H. Westernhagen, P. Cameron, V. Dethlefsen, and D. Janssen, Chlorinated hydrocarbons in North Sea whiting (Merlangius merlangus L), and effects on reproduction. I. Tissue burden and hatching success, Helgoländer Meeresuntersuchungen, vol.43, pp.45-60, 1989.

G. H. Winters, J. P. Wheeler, and E. L. Dalley, Survival of a herring stock subjected to a catastrophic event and fluctuating environmental conditions, Journal du Conseil International pour l'Exploration de la Mer, vol.43, pp.26-42, 1986.

B. Worm, E. B. Barbier, N. Beaumont, J. E. Duffy, C. Folke et al., Impacts of biodiversity loss on ocean ecosystem services, Science, vol.314, pp.787-790, 2006.