Addressing the challenges of pathogen evolution on the world's arable crops, Phytopathology, vol.106, pp.1117-1127, 2016. ,

Epidemiological and evolutionary management of plant resistance: optimizing the deployment of cultivar mixtures in time and space in agricultural landscapes, Evolutionary applications, vol.8, pp.919-932, 2015. ,

URL : https://hal.archives-ouvertes.fr/hal-01239676

Pathogen population genetics, evolutionary potential, and durable resistance, Annual review of phytopathology, vol.40, pp.349-379, 2002. ,

Assessing the durability and efficiency of landscape-based strategies to deploy plant resistance to pathogens, PLoS computational biology, vol.14, 2018. ,

Measures of durability of resistance, Phytopathology, vol.93, pp.616-625, 2003. ,

Sustainable deployment of QTLs conferring quantitative resistance to crops: first lessons from a stochastic model, New Phytologist, vol.206, pp.1163-1171, 2015. ,

URL : https://hal.archives-ouvertes.fr/hal-01076721

Quantitative resistance increases the durability of qualitative resistance to Leptosphaeria maculans in Brassica napus, New Phytologist, vol.185, pp.285-299, 2010. ,

The evolution of plant pathogens in response to host resistance: Factors affecting the gain from deployment of qualitative and quantitative resistance, Journal of theoretical biology, vol.304, pp.152-163, 2012. ,

, , 2018.

, Pyramiding quantitative resistance with a major resistance gene in apple: from ephemeral to enduring effectiveness in controlling scab

Quantitative plant resistance in cultivar mixtures: wheat yellow rust as a modeling case study, New Phytologist, vol.200, pp.888-897, 2013. ,

Coevolution of plants and their pathogens in natural habitats, Science, vol.324, pp.755-756, 2009. ,

Evolution of parasite virulence against qualitative or quantitative host resistance, Proceedings of the Royal Society of London B: Biological Sciences, vol.267, pp.985-990, 2000. ,

The plant immune system, Nature, vol.444, p.323, 2006. ,

Spatial variation in disease resistance: from molecules to metapopulations, Journal of Ecology, vol.99, pp.96-112, 2011. ,

Identifying fitness and optimal life-history strategies for an asexual filamentous fungus, Evolution, vol.60, pp.970-979, 2006. ,

Adaptation of Phytophthora infestans to partial resistance in potato: evidence from French and Moroccan populations, Phytopathology, vol.97, pp.338-343, 2007. ,

Aggressiveness and its role in the adaptation of plant pathogens, Plant Pathology, vol.58, pp.409-424, 2009. ,

Quantitative resistance to biotrophic filamentous plant pathogens: concepts, misconceptions, and mechanisms, Annual Review of Phytopathology, vol.53, pp.445-470, 2015. ,

URL : https://hal.archives-ouvertes.fr/hal-01536463

Variation and selection of quantitative traits in plant pathogens, Annual Review of Phytopathology, vol.50, pp.319-338, 2012. ,

URL : https://hal.archives-ouvertes.fr/hal-01019819

A modelling framework to simulate foliar fungal epidemics using functional-structural plant models, Annals of botany, vol.114, pp.795-812, 2014. ,

URL : https://hal.archives-ouvertes.fr/hal-01025689

Epidemic spread of a lesion-forming plant pathogen-Analysis of a mechanistic model with infinite age structure, Linear Algebra and its Applications, vol.398, pp.117-140, 2005. ,

An epidemiological framework for disease management, Advances in botanical research, vol.38, pp.1-64, 2002. ,

Systems analysis in epidemiology, Annual Review of Phytopathology, vol.18, pp.67-83, 1980. ,

Methods for estimating epidemiological effects of quantitative resistance to plant diseases, Theoretical and Applied Genetics, vol.67, pp.219-230, 1984. ,

Modelling interaction dynamics between two foliar pathogens in wheat: a multi-scale approach, Annals of botany, 2017. ,

URL : https://hal.archives-ouvertes.fr/hal-01678310

Selection and use of a mathematical model to evaluate components of resistance to Phytophthora infestans in potato, Netherlands Journal of Plant Pathology, vol.98, pp.192-202, 1992. ,

Crops that feed the world 8: Potato: are the trends of increased global production sustainable, vol.4, pp.477-508, 2012. ,

Correspondence of Charles Darwin on James Torbitt's project to breed blight-resistant potatoes, Archives of natural history, vol.35, pp.208-222, 2008. ,

What a Painfully Interesting Subject": Charles Darwin's Studies of Potato Late Blight, BioScience, vol.66, pp.1035-1045, 2016. ,

Potato and tomato late blight caused by Phytophthora infestans: an overview of pathology and resistance breeding, Plant Disease, vol.96, pp.4-17, 2012. ,

Phytophthora infestans: the plant (and R gene) destroyer. Molecular plant pathology 9, pp.385-402, 2008. ,

Alteration of pathogenicitylinked life-history traits by resistance of its host Solanum tuberosum impacts sexual reproduction of the plant pathogenic oomycete Phytophthora infestans, Journal of evolutionary biology, vol.23, pp.2668-2676, 2010. ,

A kinetic study of the mode of growth of surface colonies of bacteria and fungi, Microbiology, vol.47, pp.181-197, 1967. ,

The propagation of fungal colonies: a model for tissue growth, Journal of Theoretical Biology, vol.98, pp.679-701, 1982. ,

Estimating the delay between host infection and disease (incubation period) and assessing its significance to the epidemiology of plant diseases, PloS one, vol.9, p.86568, 2014. ,

URL : https://hal.archives-ouvertes.fr/hal-01173303

Time-dependent infectivity and flexible latent and infectious periods in compartmental models of plant disease, Phytopathology, vol.102, pp.365-380, 2012. ,

Relating the Progeny Production Curve to the Speed of an Epidemic, Phytopathology, vol.103, pp.204-215, 2013. ,

Epidemic dynamics and patterns of plant diseases, Phytopathology, vol.91, pp.1001-1010, 2001. ,

Inverse modelling, sensitivity and monte carlo analysis in R using package FME, Journal of Statistical Software, vol.33, pp.1-28, 2010. ,

, R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, 2018.

Foliar aggressiveness of Northern Ireland isolates of Phytophthora infestans on detached leaflets of three potato cultivars, Plant Pathology, vol.51, pp.424-434, 2002. ,

From lesion to region: epidemiology and management of potato late blight, 2004. ,

A laboratory assay for Phytophthora infestans resistance in various Solanum species reflects the field situation, European journal of plant pathology, vol.105, pp.241-250, 1999. ,

Erosion of quantitative host resistance in the apple× Venturia inaequalis pathosystem, Genetics and Evolution, vol.27, pp.481-489, 2014. ,

URL : https://hal.archives-ouvertes.fr/hal-01210000

, , 2016.

, Adaptation of a plant pathogen to partial host resistance: selection for greater aggressiveness in grapevine downy mildew, Evolutionary applications, vol.9, pp.709-725

Within-and among-population variation in infectivity, latency and spore production in a host-pathogen system, Journal of Evolutionary Biology, vol.15, pp.850-860, 2002. ,

Susceptibility to plant disease: more than a failure of host immunity, Trends in plant science, vol.18, pp.546-554, 2013. ,

Realistic distributions of infectious periods in epidemic models: changing patterns of persistence and dynamics, Theoretical population biology, vol.60, pp.59-71, 2001. ,

Integral equation models for endemic infectious diseases, Journal of mathematical biology, vol.9, pp.37-47, 1980. ,

Thermography versus chlorophyll fluorescence imaging for detection and quantification of apple scab. Computers and electronics in agriculture 90, pp.159-163, 2013. ,

URL : https://hal.archives-ouvertes.fr/hal-01209914

Influence of plant stage and organ age on the receptivity of Pisum sativum to Mycosphaerella pinodes, European Journal of Plant Pathology, vol.132, pp.367-379, 2012. ,

URL : https://hal.archives-ouvertes.fr/hal-01462668

Inferring growth control mechanisms in growing multi-cellular spheroids of NSCLC cells from spatialtemporal image data, PLoS computational biology, vol.12, p.1004412, 2016. ,

URL : https://hal.archives-ouvertes.fr/hal-01244593

A review of modern computational algorithms for Bayesian optimal design, International Statistical Review, vol.84, pp.128-154, 2016. ,

Qualitative and quantitative experiment design for phenomenological models-a survey, Automatica, vol.26, pp.195-213, 1990. ,

Optimal observation times in experimental epidemic processes, Biometrics, vol.64, pp.860-868, 2008. ,