Genetically engineered (modified) crops (Bacillus thuringiensis crops) and the world controversy on their safety, Egyptian Journal of Biological Pest Control, vol.28, issue.1, p.52, 2018. ,
Breeding self-pollinated species, pp.281-312, 2007. ,
Genetic manipulations in crops: Challenges and opportunities, Genomics, vol.109, issue.5, pp.494-505, 2017. ,
Efficient engineering of marker-free synthetic allotetraploids of Saccharomyces, Fungal Genetics and Biology, vol.89, pp.10-17, 2016. ,
CRISPR-TSKO: A tool for tissue-specific genome editing in plants, Trends in Plant Science, vol.25, issue.2, pp.123-126, 2020. ,
Engineering in plant genome using Agrobacterium: Progress and future, Metabolic engineering for bioactive compounds, pp.91-111, 2017. ,
Cassava yield traits predicted by genomic selection methods, PLoS One, vol.14, issue.11, 2019. ,
Search-and-replace genome editing without double-strand breaks or donor DNA, Nature, vol.576, issue.7785, pp.149-157, 2019. ,
Gene flow between cultivated and wild sunflowers, Theoretical and Applied Genetics, vol.89, issue.6, pp.655-660, 1994. ,
Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass, Biotechnology for Biofuels, vol.11, issue.1, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02001358
Transgenic crops for the agricultural improvement in Pakistan: A perspective of environmental stresses and the current status of genetically modified crops, GM Crops & Food, vol.11, issue.1, pp.1-29, 2020. ,
Base editing in plants: Current status and challenges, The Crop Journal, vol.8, issue.3, pp.384-395, 2019. ,
Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships, BMC Evolutionary Biology, vol.10, issue.1, p.26, 2010. ,
Crop improvement in the CGIAR as a global success story of open access and international collaboration, International Journal of the Commons, vol.4, pp.452-480, 2009. ,
How a fungus shapes biotechnology: 100 years of Aspergillus niger research, Fungal Biology and Biotechnology, vol.5, issue.1, p.13, 2018. ,
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome, Science, vol.560, issue.6465, pp.606-612, 2018. ,
Global conservation priorities for crop wild relatives, Nature Plants, vol.2, issue.4, p.16022, 2016. ,
, Convention on Biological Diversity, 1992.
Promise and issues of genetically modified crops, Current Opinion in Plant Biology, vol.16, issue.2, pp.255-260, 2013. ,
CRISPR/Cas genome editing and precision plant breeding in agriculture, Annual Review of Plant Biology, vol.70, issue.1, pp.667-697, 2019. ,
Crop root systems and rhizosphere interactions, Plant and Soil, vol.439, issue.1, pp.1-5, 2019. ,
Navigating the fungal polyketide chemical space: From fenes to molecules, The Journal of Organic Chemistry, vol.77, issue.22, pp.9933-9953, 2012. ,
Chromatin-dependent regulation of secondary metabolite biosynthesis in fungi: Is the picture complete?, FEMS Microbiology Reviews, vol.43, issue.6, pp.591-607, 2019. ,
Genomic selection in plant breeding: Methods, models, and perspectives, Trends in Plant Science, vol.22, issue.11, pp.961-975, 2017. ,
Genome-wide genetic marker discovery and genotyping using next-generation sequencing, Nature Reviews Genetics, vol.12, issue.7, pp.499-510, 2011. ,
CRISPR-TSKO: A technique for efficient mutagenesis in specific cell types, tissues, or organs in arabidopsis, The Plant Cell, vol.31, issue.12, pp.2868-2887, 2019. ,
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III, Nature, issue.7340, pp.602-607, 2011. ,
Past and future use of wild relatives in crop breeding, Crop Science, vol.57, issue.3, pp.1070-1082, 2017. ,
Adapting agriculture to climate change: A global initiative to collect, conserve, and use crop wild relatives. Agroecology and Sustainable Food Systems, vol.38, pp.369-377, 2014. ,
CRISPR system in filamentous fungi: Current achievements and future directions, Gene, vol.627, pp.212-221, 2017. ,
, Luxembourg: Publications Office of the European Union, 2001.
Complementary conservation actions, Crop wild relatives. A manual of in situ conservation, pp.275-294, 2011. ,
Maintaining diversity of plant genetic eesources as a basis for food security, Encyclopedia of food security and sustainability, vol.3, pp.54-63, 2019. ,
Conserving agricultural biodiversity for use in sustainable food systems, Mainstreaming agrobiodiversity in sustainable food systems: Scientific foundations for an Agrobiodiversity, pp.103-139, 2017. ,
The past, present and future of breeding rust resistant wheat, Frontiers in Plant Science, vol.5, p.641, 2014. ,
Born to run"? not necessarily: Species and trait bias in persistent free-living transgenic plants, Frontiers in Bioengineering and Biotechnology, vol.88, issue.6, 2018. ,
Predictive association between trait data and ecogeographic data for Nordic barley landraces, Crop Science, vol.50, issue.6, 2010. ,
Options to reform the European Union legislation on GMOs: Scope and definitions, Trends in Biotechnology, vol.38, issue.3, pp.231-234, 2020. ,
On the road to C4 rice: Advances and perspectives, The Plant Journal, vol.101, issue.4, pp.940-950, 2020. ,
, Voluntary Guidelines for the Conservation and Sustainable Use of Farmers' Varieties/Landraces, 2017.
The state of food security and nutrition in the world 2017. FAO, Rome: Building resilience for peace and food security, 2017. ,
De novo domestication: An alternative route toward new crops for the future, Molecular Plant, vol.12, issue.5, pp.615-631, 2019. ,
, , 2018.
, Heterologous production of the widely used natural food colorant carminic acid in Aspergillus nidulans, Scientific Reports, vol.8, issue.1, p.12853
, , 2018.
, Genomics-assisted breeding in the CGIAR research program on roots, tubers and bananas (RTB). Agriculture, 8, p.89
Breeding Agaricus bisporus at the mushroom experimental station, Mushroom Journal, vol.122, pp.49-53, 1983. ,
Diversity in fungal intermolecular phenol coupling of polyketides: Regioselective laccase-based systems, ChemBioChem, vol.20, issue.15, pp.1928-1932, 2019. ,
Epigenetics for plant improvement: Current knowledge and modeling avenues, Trends in Plant Science, vol.22, issue.7, pp.610-623, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01559716
Predictive characterisation identifies global sources of acyanogenic germplasm of a key forage species, Crop and Pasture Science, vol.70, issue.6, pp.546-554, 2019. ,
Case studies: A hard look at GM crops, Nature Biotechnol, vol.497, pp.24-26, 2013. ,
Applications of machine learning methods to genomic selection in breeding wheat for rust resistance, The Plant Genome, vol.11, issue.2, p.170104, 2018. ,
Importance of genetic diversity assessent in crop plants and its recent advances: An overview of its analystical perspectives, Genetics Research International, 2014. ,
Hybrid wheat: Past, present and future, Theoretical and Applied Genetics, vol.132, issue.9, pp.2463-2483, 2019. ,
HEx: A heterologous expression platform for the discovery of fungal natural products, Science Advances, vol.4, issue.4, p.5459, 2018. ,
Genomic selection for crop improvement, Crop Science, vol.49, issue.1, pp.1-12, 2009. ,
A chemical epigenetics approach for engineering the in situ biosynthesis of a cryptic natural product from Aspergillus niger, Organic & Biomolecular Chemistry, vol.7, issue.3, pp.435-438, 2009. ,
Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery, Nature Genetics, vol.49, issue.9, pp.1297-1303, 2017. ,
Breeding crops to feed 10 billion, Nature Biotechnology, vol.37, issue.7, pp.744-754, 2019. ,
Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies, Nature Genetics, vol.47, issue.7, pp.834-838, 2015. ,
Perspectives on the application of genome-editing technologies in crop breeding, Molecular Plant, vol.12, issue.8, pp.1047-1059, 2019. ,
CRISPR for crop improvement: An update review, Frontiers in Plant Science, issue.985, p.9, 2018. ,
The global need for plant breeding innovation, Transgenic Research, vol.28, issue.2, pp.81-86, 2019. ,
Precision genome engineering through adenine base editing in plants, Nature Plants, vol.4, issue.7, pp.427-431, 2018. ,
MIBiG 2.0: a repository for biosynthetic gene clusters of known function, Nucleic Acids Research, vol.48, issue.D1, pp.454-458, 2019. ,
A meta-analysis of the impacts of genetically modified crops, PLoS One, vol.9, issue.11, 2014. ,
Mapping the fungal battlefield: Using in situ chemistry and deletion mutants to monitor interspecific chemical interactions between fungi, Frontiers in Microbiology, vol.10, p.285, 2019. ,
Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage, Nature, vol.533, issue.7603, pp.420-424, 2016. ,
Crop biofortification for iron (Fe), zinc (Zn) and vitamin A with transgenic approaches, Heliyon, vol.5, issue.6, p.1914, 2019. ,
The genome of cultivated sweet potato contains Agrobacterium T-DNAs with expressed genes: An example of a naturally transgenic food crop, Proceedings of the National Academy of Sciences, vol.112, issue.18, pp.5844-5849, 2015. ,
Rethink the expansion of access and benefit sharing, Science, vol.367, issue.6483, pp.1200-1202, 2020. ,
Rapid improvement of domestication traits in an orphan crop by genome editing, Nature Plants, vol.4, issue.10, pp.766-770, 2018. ,
Review: Improving global food security through accelerated plant breeding, Plant Science, vol.287, p.110207, 2019. ,
The science and economics of ex situ plant conservation, Trends in Plant Science, vol.14, issue.11, pp.614-621, 2009. ,
Complete biosynthesis of noscapine and halogenated alkaloids in yeast, Proceedings of the National Academy of Sciences, vol.115, issue.17, pp.3922-3931, 2018. ,
A screening method to identify efficient sgRNAs in Arabidopsis, used in conjunction with cell-specific lignin reduction, Biotechnology for Biofuels, vol.12, issue.1, p.130, 2019. ,
The conservation value of germplasm stored at the Millennium Seed Bank, Royal Botanic Gardens, Kew. UK. Biodiversity and Conservation, vol.27, issue.6, pp.1347-1386, 2018. ,
Structural insights into the mechanism of inhibition of AHAS by herbicides, Proceedings of the National Academy of Sciences, vol.115, issue.9, pp.1945-1954, 2018. ,
Focused identification of germplasm strategy -FIGS, 2004. ,
, Proceedings of the 54th Australian Cereal Chemistry Conference and the 11th Wheat Breeders' Assembly, pp.138-141, 2004.
Australia: Cereal Chemestry Division, Royal Australian Chemical Institute ,
Worldwide CRISPR patent landscape shows strong geographical biases, Nature Biotechnology, vol.37, issue.6, pp.613-620, 2019. ,
URL : https://hal.archives-ouvertes.fr/hal-02148307
Rewiring of the austinoid biosynthetic pathway in filamentous fungi, 2017. ,
, ACS Chemical Biology, vol.12, issue.12, pp.2927-2933
Plant genetic conservation, 2020. ,
Perceptions of genetically engineered technology in developed areas, Trends in Biotechnology, vol.37, issue.5, p.6, 2018. ,
Modifying attitudes about modified foods: Increased knowledge leads to more positive attitudes, Journal of Environmental Psychology, vol.64, pp.21-29, 2019. ,
Prediction of total genetic value using genome-wide dense marker maps, Genetics, vol.157, issue.4, pp.1819-1829, 2001. ,
Evolution of crop species: Genetics of domestication and diversification, Nature Reviews Genetics, vol.14, issue.12, pp.840-852, 2013. ,
Improving the baking quality of bread wheat by genomic selection in early generations, Theoretical and Applied Genetics, vol.131, issue.2, pp.477-493, 2018. ,
Genebank genomics highlights the diversity of a global barley collection, Nature Genetics, vol.51, issue.2, pp.319-326, 2019. ,
Computer vision-based phenotyping for improvement of plant productivity: A machine learning perspective, 2018. ,
, , vol.8
Innovating within or outside dominant food systems? Different challenges for contrasting crop diversification strategies in Europe, PLoS One, vol.15, issue.3, 2020. ,
URL : https://hal.archives-ouvertes.fr/hal-02536917
Update on GM canola crops as novel sources of omega-3 fish oils, National Academies of Sciences Engineering and Medicine, vol.17, issue.4, pp.703-705, 2016. ,
, Genetically engineered crops: Experiences and prospects, pp.29-46, 2016.
Evolutionary histories of Type III polyketide synthases in fungi, Frontiers in Microbiology, vol.10, 2020. ,
Navigating complexity to breed disease-resistant crops, Nature Reviews Genetics, vol.19, issue.1, pp.21-33, 2018. ,
An overview of the last 10 years of genetically engineered crop safety research, Critical Reviews in Biotechnology, vol.34, issue.1, pp.77-88, 2014. ,
Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species, Nature Microbiology, vol.2, issue.6, p.17044, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02629382
Expanding the scope of CRISPR/Cas9-mediated genome editing in plants using an xCas9 and Cas9-NG hybrid, Journal of Integrative Plant Biology, vol.62, issue.4, pp.398-402, 2020. ,
Impact of genetically engineered maize on agronomic, environmental and toxicological traits: A meta-analysis of 21 years of field data, Scientific Reports, vol.8, issue.1, p.3113, 2018. ,
On top of biosynthetic gene clusters: How epigenetic machinery influences secondary metabolism in fungi, Biotechnology Advances, vol.37, issue.6, p.107345, 2019. ,
Potential adaptive strategies for 29 sub-Saharan crops under future climate change, Nature Climate Change, vol.9, issue.10, pp.758-763, 2019. ,
Useful fungi, State of the world's fungi 2018 report, pp.24-31, 2018. ,
Bt eggplant (Solanum melongena L.) in Bangladesh: Fruit production and control of eggplant fruit and shoot borer (Leucinodes orbonalis Guenee), effects on non-target arthropods and economic returns, PLoS One, vol.13, issue.11, p.205713, 2018. ,
, , 2014.
, Actinomycetes biosynthetic potential: How to bridge in silico and in vivo, Journal of Industrial Microbiology & Biotechnology, vol.41, issue.2, pp.387-402
The impact of synthetic biology for future agriculture and nutrition, Current Opinion in Biotechnology, vol.61, pp.102-109, 2020. ,
Extending the "One Strain Many Compounds" (OSMAC) principle to marine microorganisms, Marine Drugs, vol.16, issue.7, p.244, 2018. ,
Stacked Bt proteins pose no new eisks to nontarget arthropods, Trends in Biotechnology, vol.38, issue.3, pp.234-236, 2020. ,
Plant genetics, sustainable agriculture and global food security, Genetics, vol.188, issue.1, pp.11-20, 2011. ,
Successful high-level accumulation of fish oil omega-3 long-chain polyunsaturated fatty acids in a transgenic oilseed crop, The Plant Journal, vol.77, issue.2, pp.198-208, 2014. ,
Genetic gain from phenotypic and genomic selection for quantitative resistance to stem rust of wheat, The Plant Genome, vol.8, issue.2, pp.1-10, 2015. ,
1 Genetics and genomics of cultivated mushrooms, application to breeding of agarics, Agricultural Applications. The Mycota (A comprehensive treatise on fungi as experimental systems for basic and applied research), vol.11, pp.3-33, 2013. ,
History of plant breeding, 2018. ,
Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans, Proceedings of the National Academy of Sciences, vol.106, issue.34, pp.14558-14563, 2009. ,
Creating a sustainable food future: A menu of solutions to feed nearly 10 billion people by 2050 (Final report, 2019. ,
Editing plant genes one base at a time, Nature Plants, vol.4, issue.7, pp.412-413, 2018. ,
Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion, Nature Biotechnology, vol.35, issue.5, pp.441-443, 2017. ,
Status and trends in world mushroom production-I, Mushroom Research, vol.26, issue.1, pp.1-20, 2017. ,
Efficient curation of genebanks using next generation sequencing reveals substantial duplication of germplasm accessions, Scientific Reports, vol.9, issue.1, p.650, 2019. ,
Strategies for engineering natural product biosynthesis in fungi, Trends in Biotechnology, vol.37, issue.4, pp.416-427, 2018. ,
The impact of genetic changes during crop domestication, Agronomy, vol.8, issue.7, p.119, 2018. ,
Harnessing fungal nonribosomal cyclodepsipeptide synthetases for mechanistic insights and tailored engineering, Chemical Science, vol.8, issue.11, pp.7834-7843, 2017. ,
The Berkeleylactones, antibiotic macrolides from fungal coculture, Journal of Natural Products, vol.80, issue.4, pp.1150-1160, 2017. ,
Bacteria-induced production of the antibacterial sesquiterpene lagopodin B in Coprinopsis cinerea, Molecular Microbiology, vol.112, issue.2, pp.605-619, 2019. ,
Genomic basis of European ash tree resistance to ash dieback fungus, Nature Ecology & Evolution, vol.3, issue.12, pp.1686-1696, 2019. ,
Ditg-arstastflgcIAahhhnV 2008. Diving into the genepool -a rational system to access specific traits from large germplasm collections, 2014. ,
Deep phenotyping: Deep learning for temporal phenotype/genotype classification, Plant Methods, vol.14, issue.1, p.66, 2018. ,
Breeding technologies to increase crop production in a changing world, Science, vol.327, issue.5967, pp.818-822, 2010. ,
Applying FIGS to crop wild relatives and landraces in Europe, Crop Wild Relative, vol.8, p.1, 2012. ,
Predictive characterization of crop wild relatives and landraces, 2014. ,
Enhancing Crop Genepool Use: Capturing Wild Relative and Landrace Diversity for Crop Improvement: CAB International UK, pp.64-77, 2016. ,
Engineering herbicide-resistant watermelon variety through, 2018. ,
, CRISPR/Cas9-mediated base-editing, Plant Cell Reports, vol.37, issue.9, pp.1353-1356
Shovelomics: High throughput phenotyping of maize (Zea mays L.) root architecture in the field, Plant and Soil, vol.341, issue.1, pp.75-87, 2011. ,
Crop improvement from phenotyping roots: Highlights reveal expanding opportunities, Trends in Plant Science, vol.25, issue.1, pp.105-118, 2020. ,
Discovery of an extended austinoid biosynthetic pathway in Aspergillus calidoustus, ACS Chemical Biology, vol.12, issue.5, pp.1227-1234, 2017. ,
New genes in traditional seed systems: Diffusion, detectability and persistence of transgenes in a maize metapopulation, PLoS One, vol.7, issue.10, pp.46123-46123, 2012. ,
Q&A: Modern crop breeding for future food security, BMC Biology, vol.17, issue.1, p.18, 2019. ,
Genomic selection methods for crop improvement: Current status and prospects, The Crop Journal, vol.6, issue.4, pp.330-340, 2018. ,
Global ex-situ crop diversity conservation and the Svalbard Global Seed Vault: Assessing the current status, PLoS One, vol.8, issue.5, pp.64146-64146, 2013. ,
Conservation Policy: Helping or hindering science to unlock properties of plants and fungi, People, Planet, vol.2, issue.5, pp.535-545, 2020. ,
Revolutionizing agriculture with synthetic biology, Nature Plants, vol.5, issue.12, pp.1207-1210, 2019. ,
Predicting the global incidence of seed desiccation sensitivity, Journal of Ecology, vol.105, issue.4, pp.1082-1093, 2017. ,
Recent progress regarding the bioactivities, biosynthesis and synthesis of naturally occurring resorcinolic macrolides, Acta Pharmacologica Sinica, vol.35, issue.3, pp.316-330, 2014. ,
Diversity-oriented combinatorial biosynthesis of benzenediol lactone scaffolds by subunit shuffling of fungal polyketide synthases, Proceedings of the National Academy of Sciences, vol.111, issue.34, pp.12354-12359, 2014. ,
Single crossover-mediated targeted nucleotide substitution and knock-in strategies with CRISPR/Cas9 system in the rice blast fungus, Scientific Reports, vol.9, issue.1, 2019. ,
Developing naturally stress-resistant crops for a sustainable agriculture, Nature Plants, vol.4, issue.12, pp.989-996, 2018. ,
The emerging and uncultivated potential of CRISPR technology in plant science, Nature Plants, vol.5, issue.8, pp.778-794, 2019. ,
Applications and potential of genome editing in crop improvement, Genome Biology, vol.19, issue.1, p.210, 2018. ,
Crop phenomics: Current status and perspectives, Frontiers in Plant Science, vol.10, 2019. ,
Machine learning approaches to improve three basic plant phenotyping tasks using three-dimensional point clouds, Plant Physiology, vol.181, issue.4, pp.1425-1440, 2019. ,